# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "bayesTLS" in publications use:'
type: software
license: CC-BY-4.0
title: 'bayesTLS: Joint Bayesian 4PL Models for Thermal Load Sensitivity'
version: 1.0.0
doi: 10.64898/2026.07.16.738378
identifiers:
- type: doi
  value: 10.32614/CRAN.package.bayesTLS
abstract: Fits joint Bayesian four-parameter logistic (4PL) models to thermal-tolerance
  proportion data, extracts the classical thermal load sensitivity quantities (z,
  CTmax at 1 hour, T_crit) with full posterior uncertainty, and predicts heat-injury
  accumulation and survival under fluctuating temperature regimes with optional Sharpe-Schoolfield
  repair. Models are fitted with 'Stan' via the 'brms' package. Implements the framework
  described in Noble, Arnold, Nakagawa and Pottier (2026; bioRxiv). \doi10.64898/2026.07.16.738378.
authors:
- family-names: Noble
  given-names: Daniel W. A.
  email: daniel.noble@anu.edu.au
- family-names: Arnold
  given-names: Pieter A.
- family-names: Nakagawa
  given-names: Shinichi
- family-names: Pottier
  given-names: Patrice
  email: patrice.pottier@bioenv.gu.se
preferred-citation:
  type: article
  title: A flexible modelling framework for estimating thermal tolerance and sensitivity
  authors:
  - family-names: Noble
    given-names: Daniel W. A.
    email: daniel.noble@anu.edu.au
  - family-names: Arnold
    given-names: Pieter A.
  - family-names: Nakagawa
    given-names: Shinichi
  - family-names: Pottier
    given-names: Patrice
    email: patrice.pottier@bioenv.gu.se
  year: '2026'
  journal: bioRxiv
  doi: 10.64898/2026.07.16.738378
  url: https://www.biorxiv.org/content/10.64898/2026.07.16.738378v1
repository: https://daniel1noble.r-universe.dev
repository-code: https://github.com/daniel1noble/bayesTLS
commit: a9d5832356c60a503fc7bf75a3506702d1041cb8
url: https://www.biorxiv.org/content/10.64898/2026.07.16.738378v1
date-released: '2026-07-23'
contact:
- family-names: Noble
  given-names: Daniel W. A.
  email: daniel.noble@anu.edu.au
references:
- type: article
  title: 'brms: An R Package for Bayesian Multilevel Models Using Stan'
  authors:
  - family-names: Bürkner
    given-names: Paul-Christian
  journal: Journal of Statistical Software
  year: '2017'
  volume: '80'
  issue: '1'
  doi: 10.18637/jss.v080.i01
  start: '1'
  end: '28'
- type: manual
  title: 'RStan: the R Interface to Stan'
  authors:
  - name: Stan Development Team
  year: '2024'
  notes: R package version 2.39.0.9000
  url: https://mc-stan.org/